SELECTED PEER REVIEWED PUBLICATIONS

(Representative publications selected from 33) 

Multivariate Data Analysis for Calibration and Classification of Natural Products:

Bruckner CA, Prazen BJ, Synovec RE. Comprehensive Two-Dimensional Gas Chromatography with Chemometric Analysis. Analytical Chemistry 1998; 70: 2796-2804.

Prazen BJ, Synovec RE, Kowalski BR. Standardization of Second-Order Chromatographic/Spectroscopic Data for Optimum Chemical Analysis. Analytical Chemistry 1998; 70: 218-225.

Fraga CG, Prazen BJ, Synovec RE. Comprehensive Two-Dimensional GC and Chemometrics for the High- Speed Quantitative Analysis of Aromatic Isomers in a Jet Fuel using the Standard Addition Method and an Objective Retention Time Alignment Algorithm. Analytical Chemistry 2000; 72: 4154-4162.

Prazen BJ, Johnson KJ, Synovec RE, Comprehensive Two-Dimensional Gas Chromatography (GC x GC) and Tri-linear Partial Least Squares (tri-PLS) for the High-Speed Quantitative Analysis of Aromatic and Naphthene Content in Naphtha. Analytical Chemistry 2001; 73: 5677-5682.

Sinha AE, Hope JL, Prazen BJ, Fraga CG, Nilsson EJ, Synovec RE, Multivariate selectivity as a metric for evaluating comprehensive two-dimensional gas chromatography-time-of-flight mass spectrometry subjected to chemometric peak deconvolution. Journal of Chromatography, A 2004, 76, 13 3517-3524.

Chemical Sensor Development:

Miller KE, Bramanti E, Prazen BJ, Prezhdo M, Skogerboe KJ, Synovec RE. Multidimensional Analysis of Poly(ethylene glycols) by Size Exclusion Chromatography and Dynamic Surface Tension Detection. Analytical Chemistry 2000; 72: 4372-4380.

Sinha AE, Prazen BJ, Fraga CG and Synovec RE, Valve-Based Comprehensive Two-Dimensional Gas Chromatography with Time-of-Flight Mass Spectrometric Detection: Instrumentation and Figures-of-Merit Journal of Chromatography A 2003; 1019: 79-87.

Synovec RE, Staggemeier BA, Bramanti E, Quigley WWC, Prazen BJ, Size-exclusion chromatography with dynamic surface tension detection: Analysis of polymers and proteins (invited book chapter) Multiple Detection in Size-Exclusion Chromatography, Volume 893A. M. Striegel, 2005.

Gross GM, Prazen BJ, Grate JW, Synovec RE, High-Speed Gas Chromatography Using Synchronized Dual- Valve Injection. Analytical Chemistry, 2004, 76, 13 3517-3524.

Lenghor N, Jakmunee J, Prazen BJ, Synovec RE, Christian GD, Grudpan K, Simple sequential injection analysis systems with a dynamic surface tension detector. Anal Sci 2006, 22, 147-51.

Pattern Recognition, Machine Learning and Classification of of Metabolomics and Proteomics Data:

Sinha AE, Hope JL, Prazen BJ, Nilsson EJ, Jack RM, Synovec RE, Algorithm for locating analytes of interest based on mass spectral similarity in GCxGC-TOF-MS data: analysis of metabolites in human infant urine. Journal of Chromatography, A 2004, 1058, 1-2 209-215.

Sinha AE, Hope JL, Prazen BJ, Fraga CG, Nilsson EJ, Synovec RE, Multivariate selectivity as a metric for evaluating comprehensive two-dimensional gas chromatography-time-of-flight mass spectrometry subjected to chemometric peak deconvolution. Journal of Chromatography, A 2004, 76, 13 3517-3524.

Hope JL, Prazen BJ, Nilsson EJ, Lidstrom ME, Synovec RE, Comprehensive two-dimensional gas chromatography with time-of-flight mass spectrometry detection: analysis of amino acid and organic acid trimethylsilyl derivatives, with application to the analysis of metabolites in rye grass samples. Talanta, 2005, 65, 2 380-388.

Mayer PS, Prazen B, Baileykaze T, Pratt B, Nilsson E, Vaisar T, Pattern Recognition Mass Spectrometry for Disease Diagnosis. ASMS, 2006.

Prazen BJ, Pratt BS, Nilsson EJ, A fast, robust and reliable data analysis pipeline to produce statistically valid protein identifications and quantitation results from tandem MS. HUPO, Mol. & Cell. Prot, S287, 2006.

Vaisar T, Prazen BJ, Mayer PS, Zhao X, Pratt B, Nilsson E, Heinecke JW, The Proteomic Signature of Atherogenic HDL in Humans with Cardiovascular Disease, The Gordon Research Conference on Lipoprotein Metabolism, Waterville Valley, NH, June 2008.

Vaisar T, Mayer P, Nilsson E, Zhao XQ, Knopp R, Prazen BJ, HDL in humans with cardiovascular disease exhibits a proteomic signature. Clinica Chimica Acta, 2010, 411, 13-14, 972-979.

Deutsch E, Mendoza L, Shteynberg D, Farrah T, Lam H, Tasman N, Sun Z, Nilsson E, Pratt B, Prazen B, Eng JK, Martin DB, Nesvizhskii A, Aebersold R, A Guided Tour of the Trans Proteomic Pipeline. Proteomics, 2010,10, 6, 1150-1159.

Borja MS, Ng KF, Irwin A, Hong J, Wu X, Isquith D, Zhou XQ, Prazen B, Oda MN, Vaisar T, HDL dynamic index – A link between HDL remodeling and ABCA1-mediated efflux. J Lipid Res. 2015, 56, 10, 2002-2009.